PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4008_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 386aa    MW: 42414.3 Da    PI: 5.2119
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4008_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20172221255
                                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  cra_locus_4008_iso_1_len_2046_ver_3 172 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 221
                                          59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-33171231No hitNo description
PROSITE profilePS5103223.143172229IPR001471AP2/ERF domain
SMARTSM003809.4E-38172235IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-23172230IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-32172230IPR001471AP2/ERF domain
PRINTSPR003673.9E-11173184IPR001471AP2/ERF domain
PfamPF008474.0E-14173221IPR001471AP2/ERF domain
PRINTSPR003673.9E-11195211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAAAIDLYSR NNPVFSSDPL SEELMRALEP FMKGVSLPSS SPVSFSPPST SSSSSSFYPF  60
DSEPNLYTGF SSAPSTTQMF SSQGLSSFGQ IGVEQTSPIG LNLLTPSQIL QIQAQIQLQN  120
QQQYVASLST SVPSFQNCRK LQHQNHQSPL NFLGPKPVAM KQVGNPPKPT KLYRGVRQRH  180
WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPN LRHQLSQDFG  240
DFKPLHSSVD AKLQAICQNL ANSQKQGNSG KKLVSDPEIV NSSSSSSSSA ENNQIQAGFP  300
KLEITYDDSS NGEIIHPISD QEFKVEASAS SSSSSSPLMS DEISSLEMSS PESEITFLDF  360
AEPTFDDSVN FMLQKFPSVE IDWASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22171229160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097593.11e-117PREDICTED: ethylene-responsive transcription factor RAP2-4
TrEMBLA0A068TYQ71e-158A0A068TYQ7_COFCA; Uncharacterized protein
STRINGVIT_00s0662g00040.t011e-112(Vitis vinifera)